Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EEB64454.1 | EEB64460.1 | CAPSP0001_0478 | CAPSP0001_0475 | Outer membrane insertion signal domain protein; Identified by match to protein family HMM PF03572. | Hypothetical protein. | 0.735 |
| EEB64454.1 | EEB64462.1 | CAPSP0001_0478 | CAPSP0001_0477 | Outer membrane insertion signal domain protein; Identified by match to protein family HMM PF03572. | 2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970. | 0.773 |
| EEB64454.1 | EEB64506.1 | CAPSP0001_0478 | CAPSP0001_0012 | Outer membrane insertion signal domain protein; Identified by match to protein family HMM PF03572. | Hypothetical protein. | 0.610 |
| EEB64454.1 | EEB64940.1 | CAPSP0001_0478 | CAPSP0001_0275 | Outer membrane insertion signal domain protein; Identified by match to protein family HMM PF03572. | Retroviral aspartyl protease; Identified by match to protein family HMM PF00077. | 0.501 |
| EEB64454.1 | EEB65004.1 | CAPSP0001_0478 | CAPSP0001_2513 | Outer membrane insertion signal domain protein; Identified by match to protein family HMM PF03572. | Hypothetical protein. | 0.475 |
| EEB64454.1 | EEB65120.1 | CAPSP0001_0478 | CAPSP0001_0711 | Outer membrane insertion signal domain protein; Identified by match to protein family HMM PF03572. | Hypothetical protein. | 0.595 |
| EEB64454.1 | EEB65300.1 | CAPSP0001_0478 | CAPSP0001_2833 | Outer membrane insertion signal domain protein; Identified by match to protein family HMM PF03572. | Hypothetical protein. | 0.488 |
| EEB64454.1 | EEB65977.1 | CAPSP0001_0478 | CAPSP0001_1918 | Outer membrane insertion signal domain protein; Identified by match to protein family HMM PF03572. | Hypothetical protein. | 0.465 |
| EEB64454.1 | mutL | CAPSP0001_0478 | CAPSP0001_0479 | Outer membrane insertion signal domain protein; Identified by match to protein family HMM PF03572. | DNA mismatch repair domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.544 |
| EEB64454.1 | smpB | CAPSP0001_0478 | CAPSP0001_0476 | Outer membrane insertion signal domain protein; Identified by match to protein family HMM PF03572. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.768 |
| EEB64460.1 | EEB64454.1 | CAPSP0001_0475 | CAPSP0001_0478 | Hypothetical protein. | Outer membrane insertion signal domain protein; Identified by match to protein family HMM PF03572. | 0.735 |
| EEB64460.1 | EEB64462.1 | CAPSP0001_0475 | CAPSP0001_0477 | Hypothetical protein. | 2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970. | 0.699 |
| EEB64460.1 | mutL | CAPSP0001_0475 | CAPSP0001_0479 | Hypothetical protein. | DNA mismatch repair domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.481 |
| EEB64460.1 | smpB | CAPSP0001_0475 | CAPSP0001_0476 | Hypothetical protein. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.709 |
| EEB64462.1 | EEB64454.1 | CAPSP0001_0477 | CAPSP0001_0478 | 2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970. | Outer membrane insertion signal domain protein; Identified by match to protein family HMM PF03572. | 0.773 |
| EEB64462.1 | EEB64460.1 | CAPSP0001_0477 | CAPSP0001_0475 | 2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970. | Hypothetical protein. | 0.699 |
| EEB64462.1 | mutL | CAPSP0001_0477 | CAPSP0001_0479 | 2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970. | DNA mismatch repair domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.583 |
| EEB64462.1 | smpB | CAPSP0001_0477 | CAPSP0001_0476 | 2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.766 |
| EEB64506.1 | EEB64454.1 | CAPSP0001_0012 | CAPSP0001_0478 | Hypothetical protein. | Outer membrane insertion signal domain protein; Identified by match to protein family HMM PF03572. | 0.610 |
| EEB64506.1 | EEB64940.1 | CAPSP0001_0012 | CAPSP0001_0275 | Hypothetical protein. | Retroviral aspartyl protease; Identified by match to protein family HMM PF00077. | 0.732 |
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