STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB65758.1Hypothetical protein. (458 aa)    
Predicted Functional Partners:
EEB65879.1
Von Willebrand factor type A domain protein.
 
    0.960
EEB65761.1
Hypothetical protein.
 
   
 0.955
EEB65872.1
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
    0.950
EEB65748.1
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
    0.950
EEB66445.1
Transketolase, C-terminal domain protein; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780.
  
 0.912
EEB66750.1
PASTA domain protein; Identified by match to protein family HMM PF03793.
  
 
 0.787
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.748
yceC
Bacterial stress protein; Identified by match to protein family HMM PF02342.
 
     0.732
EEB64971.1
Hypothetical protein; Identified by glimmer; putative.
  
 0.675
EEB65508.1
Hypothetical protein.
  
 0.675
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.