STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB65887.1LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. (234 aa)    
Predicted Functional Partners:
EEB65880.1
Histidine kinase; Identified by match to protein family HMM PF06580.
 
 
 0.871
EEB65588.1
Histidine kinase; Identified by match to protein family HMM PF06580.
 
 
 0.858
EEB65804.1
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103.
       0.773
EEB65801.1
RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588.
       0.549
EEB65792.1
Hypothetical protein.
       0.476
EEB66161.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495.
 
  
 0.451
EEB64471.1
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
     0.419
EEB64473.1
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.407
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.