STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB65459.1Type I restriction enzyme HsdR protein N-terminal domain protein; Identified by match to protein family HMM PF04313. (151 aa)    
Predicted Functional Partners:
EEB65400.1
Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
     0.892
holA
DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128.
 
     0.848
EEB66873.1
Hypothetical protein.
  
     0.770
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF07669; match to protein family HMM TIGR00497.
  
 
 0.754
EEB65054.1
Hypothetical protein.
  
     0.654
EEB65589.1
Smr domain protein; Identified by match to protein family HMM PF01713.
  
     0.639
EEB66856.1
Hypothetical protein.
  
     0.563
yfiO
Outer membrane assembly lipoprotein YfiO; Identified by match to protein family HMM PF07719; match to protein family HMM TIGR03302.
  
     0.561
EEB65643.1
Putative uroporphyrinogen-III synthase; Identified by match to protein family HMM PF02602.
  
     0.541
EEB65232.1
Identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040.
  
     0.531
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.