STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB65463.1Polysulfide reductase, NrfD; Identified by match to protein family HMM PF03916. (603 aa)    
Predicted Functional Partners:
EEB65478.1
Hypothetical protein.
 
 
 
 0.999
EEB65409.1
Tat pathway signal sequence domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.999
EEB65443.1
Hypothetical protein.
 
 
 
 0.998
EEB65428.1
Hypothetical protein.
 
 
 0.998
dmsB
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.
 
 
 0.900
EEB65399.1
Glycosyl hydrolase family 20, catalytic domain protein; Identified by match to protein family HMM PF00728.
       0.773
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.723
EEB65410.1
Hypothetical protein; Identified by glimmer; putative.
       0.664
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.664
nirK
Nitrite reductase, copper-dependent; Identified by match to protein family HMM PF00034; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM TIGR02376.
   
 
 0.642
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.