STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB65429.1TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. (1002 aa)    
Predicted Functional Partners:
EEB65483.1
Hypothetical protein.
 
   
 0.937
EEB66602.1
Hypothetical protein.
 
   
 0.780
EEB64561.1
Hypothetical protein.
   
 0.780
EEB65388.1
Hypothetical protein.
       0.684
EEB66171.1
Hypothetical protein.
  
     0.679
EEB65464.1
Hypothetical protein.
       0.672
EEB64877.1
Hypothetical protein.
  
     0.660
EEB66325.1
Identified by match to protein family HMM PF07980.
  
     0.657
EEB66143.1
Hypothetical protein.
  
     0.634
EEB65267.1
Identified by match to protein family HMM PF07980.
  
     0.619
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.