STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB65460.1Transporter, major facilitator family protein; Identified by match to protein family HMM PF00854; match to protein family HMM PF07690. (686 aa)    
Predicted Functional Partners:
EEB65479.1
Hypothetical protein.
  
    0.736
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.531
EEB65454.1
THUMP domain protein; Identified by match to protein family HMM PF01170; match to protein family HMM PF02926; Belongs to the methyltransferase superfamily.
 
    0.470
EEB65432.1
Identified by match to protein family HMM PF04519.
       0.459
EEB66285.1
Peptidase, S9A/B/C family, catalytic domain protein; Identified by match to protein family HMM PF00326; match to protein family HMM PF00930.
 
    0.432
EEB65385.1
Hypothetical protein; Identified by glimmer; putative.
       0.406
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.