STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB65505.1PSP1 C-terminal domain protein; Identified by match to protein family HMM PF04468. (474 aa)    
Predicted Functional Partners:
gldH
Gliding motility lipoprotein GldH; Identified by match to protein family HMM TIGR03511.
       0.842
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.711
EEB65501.1
Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.
       0.687
EEB65503.1
Transglycosylase SLT domain protein; Identified by match to protein family HMM PF01464; match to protein family HMM PF01476.
       0.472
EEB66880.1
Putative 3-deoxy-7-phosphoheptulonate synthase; Identified by match to protein family HMM PF00793; match to protein family HMM PF01817.
  
     0.465
EEB65497.1
Identified by match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family.
       0.432
EEB65554.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.430
EEB65574.1
Hypothetical protein; Identified by glimmer; putative.
       0.430
EEB65643.1
Putative uroporphyrinogen-III synthase; Identified by match to protein family HMM PF02602.
  
     0.407
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.