STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB65567.1Hypothetical protein; Identified by glimmer; putative. (305 aa)    
Predicted Functional Partners:
EEB65560.1
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.596
EEB65548.1
Efflux transporter, outer membrane factor lipoprotein, NodT family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
    0.484
EEB64968.1
TonB family domain protein; Identified by glimmer; putative.
   
   0.415
EEB66454.1
TonB family domain protein.
   
   0.415
EEB64594.1
TonB family domain protein; Identified by glimmer; putative.
   
   0.415
EEB66899.1
TonB-dependent receptor; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
   0.415
EEB66784.1
Identified by match to protein family HMM TIGR01352.
   
   0.415
EEB66911.1
TonB-dependent receptor; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
   
   0.415
EEB66991.1
TonB family domain protein.
   
   0.415
EEB66792.1
TonB family domain protein.
   
   0.415
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.