Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EEB64651.1 | EEB64662.1 | CAPSP0001_1021 | CAPSP0001_1020 | Identified by match to protein family HMM PF07980. | TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.946 |
| EEB64651.1 | EEB64664.1 | CAPSP0001_1021 | CAPSP0001_1017 | Identified by match to protein family HMM PF07980. | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | 0.413 |
| EEB64651.1 | EEB64665.1 | CAPSP0001_1021 | CAPSP0001_1019 | Identified by match to protein family HMM PF07980. | Hypothetical protein; Identified by glimmer; putative. | 0.561 |
| EEB64651.1 | greA | CAPSP0001_1021 | CAPSP0001_1018 | Identified by match to protein family HMM PF07980. | Prokaryotic transcription elongation factor, GreA/GreB domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.462 |
| EEB64662.1 | EEB64651.1 | CAPSP0001_1020 | CAPSP0001_1021 | TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | Identified by match to protein family HMM PF07980. | 0.946 |
| EEB64662.1 | EEB64664.1 | CAPSP0001_1020 | CAPSP0001_1017 | TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | 0.411 |
| EEB64662.1 | EEB64665.1 | CAPSP0001_1020 | CAPSP0001_1019 | TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | Hypothetical protein; Identified by glimmer; putative. | 0.561 |
| EEB64662.1 | greA | CAPSP0001_1020 | CAPSP0001_1018 | TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | Prokaryotic transcription elongation factor, GreA/GreB domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.462 |
| EEB64664.1 | EEB64651.1 | CAPSP0001_1017 | CAPSP0001_1021 | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | Identified by match to protein family HMM PF07980. | 0.413 |
| EEB64664.1 | EEB64662.1 | CAPSP0001_1017 | CAPSP0001_1020 | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.411 |
| EEB64664.1 | EEB64665.1 | CAPSP0001_1017 | CAPSP0001_1019 | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | Hypothetical protein; Identified by glimmer; putative. | 0.550 |
| EEB64664.1 | greA | CAPSP0001_1017 | CAPSP0001_1018 | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | Prokaryotic transcription elongation factor, GreA/GreB domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.786 |
| EEB64665.1 | EEB64651.1 | CAPSP0001_1019 | CAPSP0001_1021 | Hypothetical protein; Identified by glimmer; putative. | Identified by match to protein family HMM PF07980. | 0.561 |
| EEB64665.1 | EEB64662.1 | CAPSP0001_1019 | CAPSP0001_1020 | Hypothetical protein; Identified by glimmer; putative. | TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.561 |
| EEB64665.1 | EEB64664.1 | CAPSP0001_1019 | CAPSP0001_1017 | Hypothetical protein; Identified by glimmer; putative. | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | 0.550 |
| EEB64665.1 | greA | CAPSP0001_1019 | CAPSP0001_1018 | Hypothetical protein; Identified by glimmer; putative. | Prokaryotic transcription elongation factor, GreA/GreB domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.625 |
| greA | EEB64651.1 | CAPSP0001_1018 | CAPSP0001_1021 | Prokaryotic transcription elongation factor, GreA/GreB domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Identified by match to protein family HMM PF07980. | 0.462 |
| greA | EEB64662.1 | CAPSP0001_1018 | CAPSP0001_1020 | Prokaryotic transcription elongation factor, GreA/GreB domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.462 |
| greA | EEB64664.1 | CAPSP0001_1018 | CAPSP0001_1017 | Prokaryotic transcription elongation factor, GreA/GreB domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Histidine triad domain protein; Identified by match to protein family HMM PF01230. | 0.786 |
| greA | EEB64665.1 | CAPSP0001_1018 | CAPSP0001_1019 | Prokaryotic transcription elongation factor, GreA/GreB domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Hypothetical protein; Identified by glimmer; putative. | 0.625 |