Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EEB66595.1Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF04932; match to protein family HMM PF07719. (823 aa)    
Predicted Functional Partners:
EEB65963.1
Hypothetical protein; Identified by glimmer; putative.
 
     0.772
EEB65377.1
Identified by match to protein family HMM PF06520.
  
   
 0.771
EEB66663.1
Phosphoribosyl transferase domain protein; Identified by match to protein family HMM PF00156.
       0.762
EEB64655.1
Hypothetical protein; Identified by glimmer; putative.
 
     0.755
EEB65630.1
TonB-dependent siderophore receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.754
EEB65854.1
Hypothetical protein.
 
     0.751
EEB64515.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
 
  
 0.745
EEB65598.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.743
EEB66728.1
Sporulation and cell division repeat protein; Identified by match to protein family HMM PF05036.
 
     0.743
EEB65500.1
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
 
  
 0.737
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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