STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB66587.1Multidrug resistance protein, SMR family; Identified by match to protein family HMM PF00893. (107 aa)    
Predicted Functional Partners:
EEB66640.1
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.768
EEB66676.1
Hydrolase, alpha/beta domain protein; Identified by match to protein family HMM PF00561; match to protein family HMM PF07819.
       0.664
EEB66653.1
Hypothetical protein.
       0.664
EEB66750.1
PASTA domain protein; Identified by match to protein family HMM PF03793.
       0.574
EEB66563.1
Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.
  
  
 0.465
czcA-2
Heavy metal efflux pump, CzcA family; Identified by match to protein family HMM PF00873; match to protein family HMM PF02321; match to protein family HMM TIGR00914; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
      
 0.416
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
  
  
 0.415
EEB66643.1
Hypothetical protein.
       0.414
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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