STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsdMType I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF07669; match to protein family HMM TIGR00497. (510 aa)    
Predicted Functional Partners:
hsdR
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
 
 0.997
EEB66599.1
Type I restriction modification DNA specificity domain protein; Identified by match to protein family HMM PF01420.
 
 
 0.995
EEB66650.1
Type I restriction modification DNA specificity domain protein; Identified by match to protein family HMM PF01420.
 
 
 0.994
EEB66604.1
Identified by match to protein family HMM PF01863.
 
     0.917
EEB66657.1
Fic family protein; Identified by match to protein family HMM PF02661.
 
 
   0.827
EEB66714.1
Hypothetical protein; Identified by glimmer; putative.
       0.773
EEB65459.1
Type I restriction enzyme HsdR protein N-terminal domain protein; Identified by match to protein family HMM PF04313.
  
 
 0.754
EEB66724.1
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.754
EEB65826.1
RecF/RecN/SMC N-terminal domain protein; Identified by match to protein family HMM PF02463.
  
  
 0.568
EEB64564.1
Restriction endonuclease; Identified by match to protein family HMM PF04471.
 
  
 0.538
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.