STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB66685.1Toxin-antitoxin system, toxin component, RelE family; Identified by match to protein family HMM PF05016. (91 aa)    
Predicted Functional Partners:
EEB66704.1
Hypothetical protein.
       0.773
EEB66684.1
Hypothetical protein; Identified by glimmer; putative.
       0.773
cvpA
Identified by match to protein family HMM PF02674.
       0.752
EEB66649.1
Hypothetical protein; Identified by glimmer; putative.
       0.730
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.730
EEB66634.1
Hypothetical protein.
       0.730
EEB66635.1
Hypothetical protein; Identified by glimmer; putative.
       0.687
EEB66759.1
Hypothetical protein; Identified by glimmer; putative.
       0.687
EEB66611.1
Hypothetical protein.
       0.668
EEB66673.1
Hypothetical protein.
       0.668
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.