Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EEB64514.1 | ybeY | CAPSP0001_0016 | CAPSP0001_1373 | Prokaryotic diacylglycerol kinase; Identified by match to protein family HMM PF01219. | Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.703 |
| EEB64578.1 | ybeY | CAPSP0001_2091 | CAPSP0001_1373 | Identified by match to protein family HMM PF02562. | Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.885 |
| EEB65024.1 | rplK | CAPSP0001_2478 | CAPSP0001_0868 | Identified by match to protein family HMM PF00899; match to protein family HMM PF05237. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.699 |
| EEB65024.1 | rplO | CAPSP0001_2478 | CAPSP0001_0586 | Identified by match to protein family HMM PF00899; match to protein family HMM PF05237. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.638 |
| EEB65024.1 | rplQ | CAPSP0001_2478 | CAPSP0001_0579 | Identified by match to protein family HMM PF00899; match to protein family HMM PF05237. | Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059. | 0.809 |
| EEB65024.1 | rplU | CAPSP0001_2478 | CAPSP0001_0961 | Identified by match to protein family HMM PF00899; match to protein family HMM PF05237. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.739 |
| EEB65024.1 | rpsQ | CAPSP0001_2478 | CAPSP0001_0596 | Identified by match to protein family HMM PF00899; match to protein family HMM PF05237. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.804 |
| EEB65024.1 | ybeY | CAPSP0001_2478 | CAPSP0001_1373 | Identified by match to protein family HMM PF00899; match to protein family HMM PF05237. | Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.871 |
| EEB66107.1 | EEB66133.1 | CAPSP0001_1371 | CAPSP0001_1372 | Hypothetical protein; Identified by glimmer; putative. | Hypothetical protein. | 0.773 |
| EEB66107.1 | ybeY | CAPSP0001_1371 | CAPSP0001_1373 | Hypothetical protein; Identified by glimmer; putative. | Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.773 |
| EEB66133.1 | EEB66107.1 | CAPSP0001_1372 | CAPSP0001_1371 | Hypothetical protein. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
| EEB66133.1 | ybeY | CAPSP0001_1372 | CAPSP0001_1373 | Hypothetical protein. | Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.773 |
| rplK | EEB65024.1 | CAPSP0001_0868 | CAPSP0001_2478 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Identified by match to protein family HMM PF00899; match to protein family HMM PF05237. | 0.699 |
| rplK | rplO | CAPSP0001_0868 | CAPSP0001_0586 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.991 |
| rplK | rplQ | CAPSP0001_0868 | CAPSP0001_0579 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059. | 0.990 |
| rplK | rplU | CAPSP0001_0868 | CAPSP0001_0961 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.989 |
| rplK | rpsQ | CAPSP0001_0868 | CAPSP0001_0596 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.990 |
| rplK | ybeY | CAPSP0001_0868 | CAPSP0001_1373 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.771 |
| rplO | EEB65024.1 | CAPSP0001_0586 | CAPSP0001_2478 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Identified by match to protein family HMM PF00899; match to protein family HMM PF05237. | 0.638 |
| rplO | rplK | CAPSP0001_0586 | CAPSP0001_0868 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.991 |
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