STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB66499.1Identified by match to protein family HMM PF01106; match to protein family HMM PF08712. (300 aa)    
Predicted Functional Partners:
EEB66544.1
Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family.
       0.773
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.747
nfuA
Identified by match to protein family HMM PF01106.
  
     0.706
frdB
Succinate dehydrogenase/fumarate reductase iron-sulfur subunit.
  
 
 0.679
fdx
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.
   
  
 0.633
EEB66024.1
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
  
 
 0.626
EEB66439.1
ATP-binding cassette protein, ChvD family; Identified by match to protein family HMM PF00005.
  
    0.567
EEB66457.1
Hypothetical protein; Identified by glimmer; putative.
       0.488
EEB66513.1
Hypothetical protein; Identified by glimmer; putative.
       0.488
EEB64462.1
2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.
  
  
 0.407
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.