STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB65666.1O-methyltransferase domain protein; Identified by match to protein family HMM PF02409. (267 aa)    
Predicted Functional Partners:
EEB65610.1
TonB-dependent receptor plug domain protein; Identified by match to protein family HMM PF07715.
 
     0.860
EEB65704.1
Coronavirus nonstructural protein NS4.
 
     0.794
EEB65683.1
Coronavirus nonstructural protein NS4.
 
     0.684
purD
Phosphoribosylamine--glycine ligase; Identified by match to protein family HMM PF01071; match to protein family HMM PF02655; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; Belongs to the GARS family.
 
      0.606
EEB65676.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
     0.603
EEB65716.1
Hypothetical protein.
  
     0.556
EEB65658.1
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.485
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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