STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB65704.1Coronavirus nonstructural protein NS4. (407 aa)    
Predicted Functional Partners:
EEB65610.1
TonB-dependent receptor plug domain protein; Identified by match to protein family HMM PF07715.
 
    0.917
EEB65666.1
O-methyltransferase domain protein; Identified by match to protein family HMM PF02409.
 
     0.794
EEB66379.1
Beta-galactosidase; Identified by match to protein family HMM PF02449.
 
     0.730
EEB66806.1
Hypothetical protein.
  
     0.682
EEB66322.1
Di-heme cytochrome C peroxidase; Identified by match to protein family HMM PF03150.
  
 
 0.674
EEB66363.1
Hypothetical protein.
  
     0.639
EEB65714.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.623
EEB65658.1
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.616
EEB66306.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.605
nirK
Nitrite reductase, copper-dependent; Identified by match to protein family HMM PF00034; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM TIGR02376.
  
 
 0.577
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.