STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB65733.1Outer membrane protein; Identified by match to protein family HMM PF03938. (171 aa)    
Predicted Functional Partners:
EEB66753.1
Bacteroidetes-specific putative membrane protein; Identified by match to protein family HMM TIGR03519.
  
     0.722
EEB64940.1
Retroviral aspartyl protease; Identified by match to protein family HMM PF00077.
  
     0.654
EEB65804.1
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103.
 
  
 0.648
EEB66062.1
Hypothetical protein.
  
     0.637
EEB64757.1
Hypothetical protein.
  
     0.625
EEB64968.1
TonB family domain protein; Identified by glimmer; putative.
  
     0.621
EEB64603.1
Hypothetical protein.
  
     0.617
EEB66991.1
TonB family domain protein.
  
     0.616
EEB66910.1
Hypothetical protein.
  
     0.603
EEB66993.1
Hypothetical protein.
  
     0.571
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.