STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB65687.1HipA-like N-terminal domain protein; Identified by match to protein family HMM PF07804; match to protein family HMM PF07805. (309 aa)    
Predicted Functional Partners:
EEB65626.1
HipA domain protein; Identified by match to protein family HMM TIGR03071.
 
     0.959
EEB65710.1
Transcriptional regulator, y4mF family; Identified by match to protein family HMM PF01381; match to protein family HMM TIGR03070.
 
     0.950
EEB65856.1
Transcriptional regulator, y4mF family.
 
     0.790
EEB65942.1
Hypothetical protein.
   
 
 0.724
EEB65602.1
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
       0.541
EEB65658.1
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
       0.490
EEB66386.1
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
  
 
 0.461
EEB66591.1
Hypothetical protein; Belongs to the peptidase S24 family.
  
 
 0.461
EEB64703.1
Peptidase S24-like protein; Identified by match to protein family HMM PF00717.
  
 
 0.461
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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