STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB64613.1BNR/Asp-box repeat protein; Identified by match to protein family HMM PF02012. (515 aa)    
Predicted Functional Partners:
EEB66379.1
Beta-galactosidase; Identified by match to protein family HMM PF02449.
  
 0.783
EEB64563.1
Dihydrodipicolinate synthetase family; Identified by match to protein family HMM PF00701; Belongs to the DapA family.
 
   
 0.779
EEB66402.1
Hypothetical protein.
  
 
 
 0.770
EEB65399.1
Glycosyl hydrolase family 20, catalytic domain protein; Identified by match to protein family HMM PF00728.
 
 
 0.770
EEB64565.1
Identified by match to protein family HMM PF01344; match to protein family HMM TIGR03548.
 
     0.770
EEB64605.1
Hypothetical protein; Identified by glimmer; putative.
       0.737
EEB66321.1
Identified by match to protein family HMM PF00657; match to protein family HMM PF03629.
     0.701
EEB64562.1
TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.688
EEB66840.1
Putative alpha-1,3-galactosidase B.
  
     0.651
EEB66781.1
Helicase C-terminal domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851.
   
    0.630
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.