STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB66883.1Identified by match to protein family HMM PF09601; match to protein family HMM TIGR02117. (225 aa)    
Predicted Functional Partners:
EEB66826.1
Hypothetical protein.
       0.598
EEB64636.1
Hypothetical protein.
  
     0.482
EEB65700.1
Hypothetical protein.
  
     0.472
EEB65096.1
Hypothetical protein.
  
     0.463
EEB66833.1
Hypothetical protein.
  
     0.455
EEB66998.1
Hypothetical protein; Identified by glimmer; putative.
       0.443
EEB66956.1
NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993.
       0.429
ftn
Ferritin-like protein; Iron-storage protein.
       0.429
EEB66953.1
Hypothetical protein; Identified by glimmer; putative.
       0.428
EEB65225.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.422
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.