STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB66809.1GH3 auxin-responsive promoter; Identified by match to protein family HMM PF03321. (500 aa)    
Predicted Functional Partners:
EEB65406.1
Hydrolase, alpha/beta domain protein; Identified by match to protein family HMM PF00561.
  
     0.722
EEB64517.1
Hypothetical protein.
 
 
 0.695
EEB65643.1
Putative uroporphyrinogen-III synthase; Identified by match to protein family HMM PF02602.
  
     0.621
EEB66824.1
Hypothetical protein; Identified by glimmer; putative.
       0.560
EEB66856.1
Hypothetical protein.
  
     0.467
argS
arginine--tRNA ligase; Identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456.
 
    0.449
EEB65472.1
Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171.
  
 
 0.439
pruA
1-pyrroline-5-carboxylate dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM TIGR01236.
  
 
 0.439
EEB65054.1
Hypothetical protein.
  
     0.435
EEB65459.1
Type I restriction enzyme HsdR protein N-terminal domain protein; Identified by match to protein family HMM PF04313.
  
     0.423
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.