STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB66892.1Identified by match to protein family HMM PF04393. (306 aa)    
Predicted Functional Partners:
EEB66996.1
Polysaccharide deacetylase; Identified by match to protein family HMM PF01522.
       0.773
uraH
Hydroxyisourate hydrolase; Identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
       0.752
EEB64881.1
Histidine acid phosphatase; Identified by match to protein family HMM PF00328.
  
     0.740
bshB1
Bacillithiol biosynthesis deacetylase BshB1; Identified by match to protein family HMM PF02585.
       0.718
EEB67015.1
Hypothetical protein.
       0.718
EEB66965.1
Sigma-70 region 2; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
       0.718
EEB66874.1
Hypothetical protein.
       0.707
EEB66787.1
Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.
       0.707
EEB66921.1
Glutathione peroxidase; Identified by match to protein family HMM PF00255; Belongs to the glutathione peroxidase family.
       0.687
EEB66928.1
Hypothetical protein.
       0.494
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.