STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sprAHypothetical protein; Identified by glimmer; putative. (2356 aa)    
Predicted Functional Partners:
EEB65419.1
Hypothetical protein.
  
 
   0.996
EEB64851.1
Hypothetical protein.
  
 
 0.996
gldL
Gliding motility-associated protein GldL; Identified by match to protein family HMM TIGR03513.
  
   
 0.904
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.885
EEB64515.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
 
 0.871
gldM
Gliding motility-associated protein GldM; Identified by match to protein family HMM TIGR03517.
  
   
 0.855
EEB66191.1
Hypothetical protein.
  
   
 0.847
gldN
Gliding motility-associated protein GldN; Identified by match to protein family HMM TIGR03523.
  
   
 0.846
gldK
Gliding motility-associated lipoprotein GldK; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR03525.
 
   
 0.830
GldJ
Gliding motility-associated lipoprotein GldJ; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR03524.
 
   
 0.825
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.