STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
petC1Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355. (176 aa)    
Predicted Functional Partners:
EEB66494.1
Peptidase M16 inactive domain protein; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; Belongs to the peptidase M16 family.
   
 0.988
fdx
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.
  
 
 0.980
frdB
Succinate dehydrogenase/fumarate reductase iron-sulfur subunit.
  
 
 0.901
dmsB
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.
 
  
 0.901
nirK
Nitrite reductase, copper-dependent; Identified by match to protein family HMM PF00034; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM TIGR02376.
  
 
 0.895
atpH
ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
   
 
 0.869
sdhA
Succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01811.
  
 
 0.852
EEB65478.1
Hypothetical protein.
  
 
 0.845
EEB65443.1
Hypothetical protein.
  
 
 0.845
EEB64398.1
Identified by match to protein family HMM PF00034.
  
 
 0.845
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.