STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB64473.1Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (409 aa)    
Predicted Functional Partners:
czcA-2
Heavy metal efflux pump, CzcA family; Identified by match to protein family HMM PF00873; match to protein family HMM PF02321; match to protein family HMM TIGR00914; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.972
EEB64475.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.972
EEB64471.1
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
   0.938
EEB64467.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.901
macB_2
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.842
EEB65823.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.834
macB
ABC transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.773
EEB65583.1
RND transporter, HAE1 family; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.675
EEB65548.1
Efflux transporter, outer membrane factor lipoprotein, NodT family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
   0.577
EEB65085.1
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
   0.563
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.