STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB64812.1Putative cytochrome c-type biogenesis protein CcsB; Identified by match to protein family HMM PF01578. (899 aa)    
Predicted Functional Partners:
EEB66610.1
Hypothetical protein.
 
  
 0.732
EEB64790.1
Hypothetical protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.625
EEB64798.1
Hypothetical protein; Identified by glimmer; putative.
       0.499
hemD
uroporphyrinogen-III synthase; Identified by match to protein family HMM PF02602.
 
    0.480
EEB64828.1
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
       0.441
EEB64802.1
Hypothetical protein.
       0.428
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
Server load: low (22%) [HD]