STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB64818.1Hypothetical protein; Identified by glimmer; putative. (468 aa)    
Predicted Functional Partners:
EEB64796.1
Glycosyl hydrolase family 20, catalytic domain protein; Identified by match to protein family HMM PF00728; match to protein family HMM PF02838.
  
  
 0.765
EEB64801.1
Hypothetical protein; Identified by glimmer; putative.
       0.616
EEB65108.1
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
    
 
 0.513
EEB66976.1
Hypothetical protein; Identified by glimmer; putative.
    
 
 0.513
EEB66906.1
Hypothetical protein; Identified by glimmer; putative.
    
 
 0.513
EEB66808.1
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
    
 
 0.513
EEB64814.1
Identified by match to protein family HMM PF07980.
     
 0.458
glgP
Alpha-glucan phosphorylase; Identified by match to protein family HMM PF00343; match to protein family HMM PF05693; match to protein family HMM TIGR02094.
  
  
 0.421
EEB64811.1
Hypothetical protein; Identified by glimmer; putative.
       0.417
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.