STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB65226.1TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. (985 aa)    
Predicted Functional Partners:
EEB65195.1
Identified by match to protein family HMM PF07980.
 
     0.888
EEB64814.1
Identified by match to protein family HMM PF07980.
  
     0.768
EEB65267.1
Identified by match to protein family HMM PF07980.
  
     0.763
EEB66748.1
Identified by match to protein family HMM PF07980.
  
     0.755
EEB65194.1
O-Glycosyl hydrolase family 30; Identified by match to protein family HMM PF02055; Belongs to the glycosyl hydrolase 30 family.
 
     0.748
EEB66325.1
Identified by match to protein family HMM PF07980.
  
     0.743
EEB66817.1
Identified by match to protein family HMM PF07980.
  
     0.719
EEB65698.1
Identified by match to protein family HMM PF07980.
  
     0.715
EEB66710.1
Identified by match to protein family HMM PF07495.
  
     0.714
EEB64651.1
Identified by match to protein family HMM PF07980.
  
     0.679
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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