STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB64398.1Identified by match to protein family HMM PF00034. (165 aa)    
Predicted Functional Partners:
petC1
Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.
  
 
 0.845
EEB66148.1
Hypothetical protein.
 
     0.746
EEB65097.1
Hypothetical protein.
  
 
 0.658
ric
Iron-sulfur cluster repair di-iron protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
  
  
 0.655
EEB65463.1
Polysulfide reductase, NrfD; Identified by match to protein family HMM PF03916.
 
 
 
 0.636
EEB65428.1
Hypothetical protein.
 
 
 0.578
pgk
Phosphoglycerate kinase; Identified by match to protein family HMM PF00162; Belongs to the phosphoglycerate kinase family.
  
    0.574
EEB65409.1
Tat pathway signal sequence domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.562
frdB
Succinate dehydrogenase/fumarate reductase iron-sulfur subunit.
   
  
 0.549
EEB64392.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
    0.518
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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