STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB65353.1Putative glycogen debranching enzyme, archaeal type; Identified by match to protein family HMM PF06202. (648 aa)    
Predicted Functional Partners:
glgP
Alpha-glucan phosphorylase; Identified by match to protein family HMM PF00343; match to protein family HMM PF05693; match to protein family HMM TIGR02094.
 
 
 0.986
EEB65341.1
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
 
 0.918
EEB65337.1
Glycosyl hydrolase, family 57; Identified by match to protein family HMM PF01522; match to protein family HMM PF03065.
 
  
 0.915
EEB65312.1
Hypothetical protein.
       0.773
EEB65317.1
Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922.
 
  
 0.750
EEB66156.1
Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128.
  
  
 0.587
EEB65322.1
Identified by match to protein family HMM TIGR02436.
       0.536
EEB65352.1
Hypothetical protein; Identified by glimmer; putative.
       0.405
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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