STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEK15468.1Hypothetical protein. (133 aa)    
Predicted Functional Partners:
EEK15438.1
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
 
     0.948
EEK15456.1
Hypothetical protein; Identified by glimmer; putative.
 
     0.948
EEK15452.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.909
EEK15011.1
Hypothetical protein.
 
     0.814
EEK13324.1
Hypothetical protein.
 
     0.812
EEK15657.1
3-oxoacyl-(acyl carrier protein) synthase III; Identified by match to protein family HMM PF08541.
 
     0.811
EEK15472.1
acyl-CoA thioester hydrolase, YbgC/YbaW family; Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051.
       0.806
EEK15338.1
Hypothetical protein.
 
     0.782
EEK15290.1
Outer membrane lipoprotein carrier protein LolA; Identified by match to protein family HMM PF03548.
 
     0.780
EEK15476.1
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
       0.773
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.