STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEK13958.1Hypothetical protein. (1100 aa)    
Predicted Functional Partners:
EEK13557.1
Hypothetical protein.
  
     0.760
EEK13395.1
Putative phage head-tail adaptor.
  
     0.757
EEK14437.1
Hypothetical protein.
  
     0.744
yaeT
Outer membrane protein assembly complex, YaeT protein; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.
  
     0.743
EEK14947.1
Hypothetical protein.
  
     0.719
EEK14602.1
Hypothetical protein.
  
     0.715
EEK14864.1
Hypothetical protein.
  
     0.701
EEK13922.1
Outer membrane protein; Identified by match to protein family HMM PF03938.
  
     0.671
yidC
Membrane protein insertase, YidC/Oxa1 family domain protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
     0.652
EEK14274.1
Permease, YjgP/YjgQ family; Identified by match to protein family HMM PF03739.
  
     0.652
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.