STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEK14028.1Hypothetical protein; Identified by glimmer; putative. (42 aa)    
Predicted Functional Partners:
EEK14073.1
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
       0.768
EEK14014.1
Identified by match to protein family HMM PF01878; Belongs to the UPF0310 family.
       0.768
EEK13976.1
Identified by match to protein family HMM PF02525.
       0.586
EEK13990.1
Hypothetical protein; Identified by glimmer; putative.
       0.488
EEK14001.1
Hypothetical protein; Identified by glimmer; putative.
       0.479
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.