STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEK14091.1Nitroreductase family protein; Identified by glimmer; putative. (238 aa)    
Predicted Functional Partners:
EEK14063.1
Hypothetical protein; Identified by glimmer; putative.
       0.648
EEK14083.1
HIRAN domain protein; Identified by match to protein family HMM PF08797.
  
    0.619
EEK13985.1
Hypothetical protein; Identified by glimmer; putative.
       0.587
EEK14108.1
SMI1 / KNR4 family protein; Identified by match to protein family HMM PF09346.
       0.587
EEK14552.1
Hypothetical protein.
  
    0.463
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
   
    0.434
EEK15438.1
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
  
    0.430
EEK14713.1
Putative ABC transporter; Identified by match to protein family HMM PF01061.
  
    0.430
EEK14729.1
Putative ABC transporter; Identified by match to protein family HMM PF01061.
  
    0.430
EEK14970.1
Hypothetical protein.
  
    0.430
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.