EEK14017.1 protein (Capnocytophaga gingivalis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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[Homology]

Score

EEK14017.1

Hypothetical protein. (438 aa)

Predicted Functional Partners:

EEK14043.1

0.948

EEK13959.1

0.938

EEK14049.1

0.924

EEK14105.1

0.862

EEK14064.1

0.860

EEK14010.1

0.858

EEK14055.1

0.858

EEK14042.1

0.850

EEK13972.1

0.846

EEK14107.1

0.844

Your Current Organism:

Capnocytophaga gingivalis

NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEK13959.1	EEK13972.1	CAPGI0001_0219	CAPGI0001_0224	Hypothetical protein.	TonB-dependent receptor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00593.	0.849
EEK13959.1	EEK14010.1	CAPGI0001_0219	CAPGI0001_0215	Hypothetical protein.	Hypothetical protein.	0.406
EEK13959.1	EEK14017.1	CAPGI0001_0219	CAPGI0001_0217	Hypothetical protein.	Hypothetical protein.	0.938
EEK13959.1	EEK14042.1	CAPGI0001_0219	CAPGI0001_0223	Hypothetical protein.	Hypothetical protein.	0.406
EEK13959.1	EEK14043.1	CAPGI0001_0219	CAPGI0001_0218	Hypothetical protein.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.938
EEK13959.1	EEK14049.1	CAPGI0001_0219	CAPGI0001_0220	Hypothetical protein.	TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593.	0.931
EEK13959.1	EEK14055.1	CAPGI0001_0219	CAPGI0001_0222	Hypothetical protein.	Hypothetical protein.	0.854
EEK13959.1	EEK14064.1	CAPGI0001_0219	CAPGI0001_0216	Hypothetical protein.	TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593.	0.856
EEK13959.1	EEK14105.1	CAPGI0001_0219	CAPGI0001_0214	Hypothetical protein.	Hypothetical protein.	0.853
EEK13959.1	EEK14107.1	CAPGI0001_0219	CAPGI0001_0225	Hypothetical protein.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.847
EEK13972.1	EEK13959.1	CAPGI0001_0224	CAPGI0001_0219	TonB-dependent receptor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00593.	Hypothetical protein.	0.849
EEK13972.1	EEK14010.1	CAPGI0001_0224	CAPGI0001_0215	TonB-dependent receptor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00593.	Hypothetical protein.	0.817
EEK13972.1	EEK14017.1	CAPGI0001_0224	CAPGI0001_0217	TonB-dependent receptor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00593.	Hypothetical protein.	0.846
EEK13972.1	EEK14042.1	CAPGI0001_0224	CAPGI0001_0223	TonB-dependent receptor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00593.	Hypothetical protein.	0.935
EEK13972.1	EEK14043.1	CAPGI0001_0224	CAPGI0001_0218	TonB-dependent receptor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00593.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.846
EEK13972.1	EEK14055.1	CAPGI0001_0224	CAPGI0001_0222	TonB-dependent receptor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00593.	Hypothetical protein.	0.933
EEK13972.1	EEK14105.1	CAPGI0001_0224	CAPGI0001_0214	TonB-dependent receptor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00593.	Hypothetical protein.	0.816
EEK13972.1	EEK14107.1	CAPGI0001_0224	CAPGI0001_0225	TonB-dependent receptor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00593.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.982
EEK14010.1	EEK13959.1	CAPGI0001_0215	CAPGI0001_0219	Hypothetical protein.	Hypothetical protein.	0.406
EEK14010.1	EEK13972.1	CAPGI0001_0215	CAPGI0001_0224	Hypothetical protein.	TonB-dependent receptor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00593.	0.817

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