STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEK15218.1Hypothetical protein. (156 aa)    
Predicted Functional Partners:
EEK15126.1
Identified by match to protein family HMM PF09365; match to protein family HMM TIGR02453.
 
     0.784
EEK15029.1
Hypothetical protein.
       0.773
EEK15263.1
Identified by match to protein family HMM PF00903.
 
     0.701
EEK15252.1
Hypothetical protein.
 
     0.530
EEK15158.1
Identified by match to protein family HMM PF04237.
       0.465
EEK15265.1
Sigma-70 region 2; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
       0.428
EEK15207.1
DGPF domain protein; Identified by match to protein family HMM PF04946.
       0.428
EEK15191.1
Hypothetical protein.
       0.417
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.