EEK14142.1 protein (Capnocytophaga gingivalis)

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EEK14142.1

ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (630 aa)

Predicted Functional Partners:

rplF

0.622

rplU

0.606

rplT

0.601

rpsC

0.599

rplD

0.594

rpsO

0.592

rpmD

0.590

rpmH

0.588

rpsJ

0.586

rplC

0.586

Your Current Organism:

Capnocytophaga gingivalis

NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEK14142.1	rplC	CAPGI0001_0960	CAPGI0001_0417	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.586
EEK14142.1	rplD	CAPGI0001_0960	CAPGI0001_0418	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.594
EEK14142.1	rplF	CAPGI0001_0960	CAPGI0001_0431	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.622
EEK14142.1	rplT	CAPGI0001_0960	CAPGI0001_1620	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.601
EEK14142.1	rplU	CAPGI0001_0960	CAPGI0001_0996	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.606
EEK14142.1	rpmD	CAPGI0001_0960	CAPGI0001_0434	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308.	0.590
EEK14142.1	rpmH	CAPGI0001_0960	CAPGI0001_1519	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family.	0.588
EEK14142.1	rpsC	CAPGI0001_0960	CAPGI0001_0423	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.599
EEK14142.1	rpsJ	CAPGI0001_0960	CAPGI0001_0416	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.586
EEK14142.1	rpsO	CAPGI0001_0960	CAPGI0001_2297	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.592
rplC	EEK14142.1	CAPGI0001_0417	CAPGI0001_0960	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.586
rplC	rplD	CAPGI0001_0417	CAPGI0001_0418	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplF	CAPGI0001_0417	CAPGI0001_0431	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.997
rplC	rplT	CAPGI0001_0417	CAPGI0001_1620	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.991
rplC	rplU	CAPGI0001_0417	CAPGI0001_0996	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.993
rplC	rpmD	CAPGI0001_0417	CAPGI0001_0434	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308.	0.997
rplC	rpmH	CAPGI0001_0417	CAPGI0001_1519	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family.	0.953
rplC	rpsC	CAPGI0001_0417	CAPGI0001_0423	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.998
rplC	rpsJ	CAPGI0001_0417	CAPGI0001_0416	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.996
rplC	rpsO	CAPGI0001_0417	CAPGI0001_2297	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.976

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