Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEK13493.1 | EEK13521.1 | CAPGI0001_1975 | CAPGI0001_1974 | Histidine kinase; Identified by match to protein family HMM PF06580. | Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. | 0.976 |
EEK13493.1 | EEK14709.1 | CAPGI0001_1975 | CAPGI0001_1233 | Histidine kinase; Identified by match to protein family HMM PF06580. | Hypothetical protein. | 0.421 |
EEK13493.1 | EEK14750.1 | CAPGI0001_1975 | CAPGI0001_1234 | Histidine kinase; Identified by match to protein family HMM PF06580. | Two component regulator propeller; Identified by glimmer; putative. | 0.688 |
EEK13493.1 | EEK14793.1 | CAPGI0001_1975 | CAPGI0001_1339 | Histidine kinase; Identified by match to protein family HMM PF06580. | LytTr DNA-binding domain protein; Identified by match to protein family HMM PF04397. | 0.538 |
EEK13521.1 | EEK13493.1 | CAPGI0001_1974 | CAPGI0001_1975 | Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. | Histidine kinase; Identified by match to protein family HMM PF06580. | 0.976 |
EEK13521.1 | EEK14750.1 | CAPGI0001_1974 | CAPGI0001_1234 | Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. | Two component regulator propeller; Identified by glimmer; putative. | 0.762 |
EEK14709.1 | EEK13493.1 | CAPGI0001_1233 | CAPGI0001_1975 | Hypothetical protein. | Histidine kinase; Identified by match to protein family HMM PF06580. | 0.421 |
EEK14709.1 | EEK14750.1 | CAPGI0001_1233 | CAPGI0001_1234 | Hypothetical protein. | Two component regulator propeller; Identified by glimmer; putative. | 0.906 |
EEK14750.1 | EEK13493.1 | CAPGI0001_1234 | CAPGI0001_1975 | Two component regulator propeller; Identified by glimmer; putative. | Histidine kinase; Identified by match to protein family HMM PF06580. | 0.688 |
EEK14750.1 | EEK13521.1 | CAPGI0001_1234 | CAPGI0001_1974 | Two component regulator propeller; Identified by glimmer; putative. | Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. | 0.762 |
EEK14750.1 | EEK14709.1 | CAPGI0001_1234 | CAPGI0001_1233 | Two component regulator propeller; Identified by glimmer; putative. | Hypothetical protein. | 0.906 |
EEK14750.1 | EEK14793.1 | CAPGI0001_1234 | CAPGI0001_1339 | Two component regulator propeller; Identified by glimmer; putative. | LytTr DNA-binding domain protein; Identified by match to protein family HMM PF04397. | 0.532 |
EEK14793.1 | EEK13493.1 | CAPGI0001_1339 | CAPGI0001_1975 | LytTr DNA-binding domain protein; Identified by match to protein family HMM PF04397. | Histidine kinase; Identified by match to protein family HMM PF06580. | 0.538 |
EEK14793.1 | EEK14750.1 | CAPGI0001_1339 | CAPGI0001_1234 | LytTr DNA-binding domain protein; Identified by match to protein family HMM PF04397. | Two component regulator propeller; Identified by glimmer; putative. | 0.532 |