STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEK14538.1LysM domain protein; Identified by match to protein family HMM PF01476. (639 aa)    
Predicted Functional Partners:
trpS
tryptophan--tRNA ligase; Identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.785
EEK15331.1
Sporulation and cell division repeat protein; Identified by match to protein family HMM PF05036.
  
     0.656
EEK15605.1
Hypothetical protein.
  
  
 0.647
EEK14468.1
Hypothetical protein.
  
     0.636
EEK14355.1
Hypothetical protein.
  
     0.631
EEK13332.1
Hypothetical protein.
  
     0.626
EEK13265.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.624
EEK14641.1
Identified by match to protein family HMM PF00691.
 
 
 0.617
EEK13927.1
Hypothetical protein.
  
     0.604
EEK14653.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
 
   
 0.602
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.