EEK14571.1 protein (Capnocytophaga gingivalis)

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EEK14571.1

ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (539 aa)

Predicted Functional Partners:

EEK14620.1

0.682

rplU

0.606

rpsC

0.599

rplD

0.594

rpsO

0.592

rpmD

0.590

rpmH

0.588

rpsJ

0.586

rplC

0.586

rpsS

0.586

Your Current Organism:

Capnocytophaga gingivalis

NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEK14571.1	EEK14620.1	CAPGI0001_1671	CAPGI0001_1670	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Hypothetical protein; Identified by glimmer; putative.	0.682
EEK14571.1	rplC	CAPGI0001_1671	CAPGI0001_0417	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.586
EEK14571.1	rplD	CAPGI0001_1671	CAPGI0001_0418	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.594
EEK14571.1	rplU	CAPGI0001_1671	CAPGI0001_0996	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.606
EEK14571.1	rpmD	CAPGI0001_1671	CAPGI0001_0434	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308.	0.590
EEK14571.1	rpmH	CAPGI0001_1671	CAPGI0001_1519	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family.	0.588
EEK14571.1	rpsC	CAPGI0001_1671	CAPGI0001_0423	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.599
EEK14571.1	rpsJ	CAPGI0001_1671	CAPGI0001_0416	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.586
EEK14571.1	rpsO	CAPGI0001_1671	CAPGI0001_2297	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.592
EEK14571.1	rpsS	CAPGI0001_1671	CAPGI0001_0421	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.586
EEK14620.1	EEK14571.1	CAPGI0001_1670	CAPGI0001_1671	Hypothetical protein; Identified by glimmer; putative.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.682
rplC	EEK14571.1	CAPGI0001_0417	CAPGI0001_1671	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.586
rplC	rplD	CAPGI0001_0417	CAPGI0001_0418	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplU	CAPGI0001_0417	CAPGI0001_0996	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.993
rplC	rpmD	CAPGI0001_0417	CAPGI0001_0434	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308.	0.997
rplC	rpmH	CAPGI0001_0417	CAPGI0001_1519	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family.	0.953
rplC	rpsC	CAPGI0001_0417	CAPGI0001_0423	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.998
rplC	rpsJ	CAPGI0001_0417	CAPGI0001_0416	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.996
rplC	rpsO	CAPGI0001_0417	CAPGI0001_2297	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.976
rplC	rpsS	CAPGI0001_0417	CAPGI0001_0421	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.998

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