STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEK14529.1Hypothetical protein. (254 aa)    
Predicted Functional Partners:
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.831
EEK15743.1
Hypothetical protein.
 
 
 0.806
EEK15727.1
Hypothetical protein.
 
 
 0.791
EEK14601.1
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.773
EEK14741.1
Tetratricopeptide repeat protein; Identified by glimmer; putative.
  
     0.765
EEK14593.1
Transport energizing protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
 
 
 0.759
EEK14026.1
Hypothetical protein.
  
     0.727
EEK13994.1
Hypothetical protein.
  
     0.723
EEK15412.1
Hypothetical protein.
  
     0.713
EEK14468.1
Hypothetical protein.
  
     0.713
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.