Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEK14461.1Hypothetical protein. (644 aa)    
Predicted Functional Partners:
EEK13876.1
Hypothetical protein.
  
     0.765
gldM
Gliding motility-associated protein GldM; Identified by match to protein family HMM TIGR03517.
  
     0.759
gldI
Peptidyl-prolyl isomerase, gliding motility-associated; Identified by match to protein family HMM PF00254; match to protein family HMM TIGR03516.
  
    0.753
EEK13385.1
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103.
  
     0.753
EEK13332.1
Hypothetical protein.
  
     0.749
EEK13916.1
Hypothetical protein.
  
     0.746
EEK13881.1
Hypothetical protein.
  
    0.732
EEK13265.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.730
EEK15762.1
Hypothetical protein.
  
     0.719
EEK13729.1
Hypothetical protein.
  
     0.713
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
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