Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEK14233.1Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (105 aa)    
Predicted Functional Partners:
EEK14289.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
     0.987
EEK15244.1
Hypothetical protein.
  
 
 
 0.872
gldI
Peptidyl-prolyl isomerase, gliding motility-associated; Identified by match to protein family HMM PF00254; match to protein family HMM TIGR03516.
  
     0.771
EEK13876.1
Hypothetical protein.
  
    0.756
EEK13916.1
Hypothetical protein.
  
     0.755
EEK13332.1
Hypothetical protein.
  
     0.738
EEK14514.1
Hypothetical protein.
  
     0.736
EEK15762.1
Hypothetical protein.
  
     0.732
EEK14274.1
Permease, YjgP/YjgQ family; Identified by match to protein family HMM PF03739.
       0.721
EEK13369.1
Hypothetical protein.
  
     0.718
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
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