STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EEK14528.1Putative gliding motility-associated ABC transporter permease protein GldF. (299 aa)    
Predicted Functional Partners:
GldG
Gliding-associated putative ABC transporter substrate-binding component GldG; Identified by match to protein family HMM TIGR03521.
  
 0.995
EEK15490.1
Putative gliding motility-associated ABC transporter ATP-binding subunit GldA; Identified by match to protein family HMM PF00005.
 
 
 0.908
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
    0.710
EEK15452.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.614
EEK13936.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.614
EEK14712.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.614
EEK14809.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.614
gldD
Gliding motility-associated lipoprotein GldD; Identified by match to protein family HMM TIGR03512.
  
   
 0.609
EEK14289.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
       0.577
GldJ
Gliding motility-associated lipoprotein GldJ; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR03524.
  
     0.561
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
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