Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EEK14510.1FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266. (349 aa)    
Predicted Functional Partners:
EEK14463.1
Hypothetical protein.
 
     0.763
LldD
Dehydrogenase, FMN-dependent; Identified by match to protein family HMM PF01070.
   
 
 0.545
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
     
 0.538
EEK13342.1
Hypothetical protein.
  
     0.521
EEK13833.1
Putative (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Identified by match to protein family HMM PF01040.
 
     0.492
EEK15117.1
Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.
  
 
 
 0.444
EEK14431.1
Hypothetical protein; Identified by glimmer; putative.
       0.430
pncB
Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.
       0.425
EEK13942.1
Identified by match to protein family HMM PF08885.
 
     0.421
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.417
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
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