STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEK14418.1HDIG domain protein; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277. (680 aa)    
Predicted Functional Partners:
EEK14495.1
Amidinotransferase; Identified by match to protein family HMM PF02274.
       0.678
EEK14319.1
Hypothetical protein; Identified by glimmer; putative.
  
  
 0.622
dam
DNA adenine methylase; Identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571.
 
 
   0.584
EEK15278.1
TonB family domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
  
     0.504
dacA
TIGR00159 family protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.504
EEK14397.1
Hypothetical protein; Identified by glimmer; putative.
       0.504
EEK14218.1
Hypothetical protein.
       0.504
EEK14480.1
DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family.
       0.504
EEK14374.1
DNA topoisomerase IV subunit B; Identified by match to protein family HMM PF00204; match to protein family HMM PF02518.
       0.480
EEK15790.1
Hypothetical protein.
 
     0.421
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
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