Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
damDNA adenine methylase; Identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571. (306 aa)    
Predicted Functional Partners:
EEK14480.1
DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.962
EEK14218.1
Hypothetical protein.
 
     0.915
EEK14397.1
Hypothetical protein; Identified by glimmer; putative.
       0.773
EEK14374.1
DNA topoisomerase IV subunit B; Identified by match to protein family HMM PF00204; match to protein family HMM PF02518.
  
    0.748
EEK14328.1
Hypothetical protein; Identified by glimmer; putative.
       0.618
EEK14418.1
HDIG domain protein; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277.
 
 
   0.584
EEK14495.1
Amidinotransferase; Identified by match to protein family HMM PF02274.
       0.569
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
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