STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEK14304.1Hypothetical protein. (103 aa)    
Predicted Functional Partners:
EEK14355.1
Hypothetical protein.
 
     0.842
EEK14388.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.712
cvpA
Identified by match to protein family HMM PF02674.
 
  
 0.677
clpS
ATP-dependent Clp protease adaptor protein ClpS; Identified by match to protein family HMM PF02617; Belongs to the ClpS family.
  
    0.646
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
       0.565
EEK14135.1
Hypothetical protein.
  
    0.554
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
   
 
 0.541
gldD
Gliding motility-associated lipoprotein GldD; Identified by match to protein family HMM TIGR03512.
  
     0.526
EEK14444.1
Identified by match to protein family HMM PF00857.
       0.519
EEK13507.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.516
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.